Atal Amrit Abhiyan Society was set up to administer the scheme. The society was registered under Societies Registration Act, XXI of 1850 on 05.07.2017. The Society was set up to serve as the Principal Implementation Agency of Atal Amrit Abhiyan Scheme in the State along with any other ancillary activities in the health sector.

The Governing Body of the Society is chaired by Minister, Health & Family Welfare, senior most Secretary, Health & Family Welfare Department as Vice-Chairmen and Chief Executive Officer, Atal Amrit Abhiyan Society as Member Secretary.

The Executive Committee of the Society is chaired by senior most Secretary, Health & Family Welfare Department with Chief Executive Officer, Atal Amrit Abhiyan Society as Member Secretary along with other members.